Download Hydrocarbon and Lipid Microbiology Protocols: Bioproducts, by Terry J. McGenity, Kenneth N. Timmis, Balbina Nogales PDF

By Terry J. McGenity, Kenneth N. Timmis, Balbina Nogales

This quantity covers protocols for varied functions in hydrocarbon microbiology, together with these of curiosity for business approaches, biocatalysis, lipid and biofuel creation, bioproducts, or the human microbiome. It provides targeted protocols for the sensible screening of enzymes performing on greasy molecules (i.e. lipases, esterases), together with assays for enantioselective biocatalysts, in addition to methods for protein exhibit applied sciences. Protocols for making improvements to gas caliber and creation of biofuel and lipids in numerous hosts (bacteria, algae, yeast) also are supplied. The construction of biogas from natural waste and its fermentation into value-added items equivalent to polyhydroxyalkanoates is roofed, in addition to an in-vitro version of the intestine microbiome for short-chain fatty acid metabolism and microbial variety analyses. The purposes awarded are examples of the various power functions in hydrocarbon and lipid microbiology, and lots of (i.e. protein-display applied sciences) can be of curiosity in different learn fields.

Hydrocarbon and Lipid Microbiology Protocols

There are tens of hundreds of thousands of structurally diversified hydrocarbons, hydrocarbon derivatives and lipids, and a big selection of those molecules are required for cells to operate. the worldwide hydrocarbon cycle, that is principally pushed through microorganisms, has an incredible impression on our surroundings and weather. Microbes are liable for cleansing up the environmental pollutants because of the exploitation of hydrocarbon reservoirs and also will be pivotal in decreasing our reliance on fossil fuels via offering biofuels, plastics and commercial chemical substances. Gaining an figuring out of the proper capabilities of the wide variety of microbes that produce, devour and alter hydrocarbons and comparable compounds should be key to responding to those demanding situations. This accomplished number of present and rising protocols will facilitate acquisition of this figuring out and exploitation of priceless actions of such microbes.

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By Terry J. McGenity, Kenneth N. Timmis, Balbina Nogales

This quantity covers protocols for varied functions in hydrocarbon microbiology, together with these of curiosity for business approaches, biocatalysis, lipid and biofuel creation, bioproducts, or the human microbiome. It provides targeted protocols for the sensible screening of enzymes performing on greasy molecules (i.e. lipases, esterases), together with assays for enantioselective biocatalysts, in addition to methods for protein exhibit applied sciences. Protocols for making improvements to gas caliber and creation of biofuel and lipids in numerous hosts (bacteria, algae, yeast) also are supplied. The construction of biogas from natural waste and its fermentation into value-added items equivalent to polyhydroxyalkanoates is roofed, in addition to an in-vitro version of the intestine microbiome for short-chain fatty acid metabolism and microbial variety analyses. The purposes awarded are examples of the various power functions in hydrocarbon and lipid microbiology, and lots of (i.e. protein-display applied sciences) can be of curiosity in different learn fields.

Hydrocarbon and Lipid Microbiology Protocols

There are tens of hundreds of thousands of structurally diversified hydrocarbons, hydrocarbon derivatives and lipids, and a big selection of those molecules are required for cells to operate. the worldwide hydrocarbon cycle, that is principally pushed through microorganisms, has an incredible impression on our surroundings and weather. Microbes are liable for cleansing up the environmental pollutants because of the exploitation of hydrocarbon reservoirs and also will be pivotal in decreasing our reliance on fossil fuels via offering biofuels, plastics and commercial chemical substances. Gaining an figuring out of the proper capabilities of the wide variety of microbes that produce, devour and alter hydrocarbons and comparable compounds should be key to responding to those demanding situations. This accomplished number of present and rising protocols will facilitate acquisition of this figuring out and exploitation of priceless actions of such microbes.

Show description

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Positive clones will appear as intense or pale yellow colonies in 1–60 min (see Note 6). The protocol can be also performed by spraying with filtersterilized catechol (1% w/v) after 36 h of incubation [20]. Positive colonies turned yellow due to extradiol cleavage of catechol. As example, a total of 254 unique positive clones (corresponding to a hit rate of 1:240) were identified as active out of a total of 61,000 clones in two contaminated soil samples [24]. In some cases, screening for extradiol dioxygenase can be performed also in liquid assays [25], as follows.

Chem Biol 12:895–904 46. Ferrer M, Golyshina OV, Chernikova TN, Khachane AN, Reyes-Duarte D, Santos VA, Strompl C, Elborough K, Jarvis G, Neef A, Yakimov MM, Timmis KN, Golyshin PN (2005) Novel hydrolase diversity retrieved from a metagenome library of bovine rumen microflora. Environ Microbiol 7:1996–2010 47. Anderson JA (1940) The use of tributyrin agar in dairy bacteriology. Rept Proc Int Congr Microbiol 3:726 48. Sulaiman S, Yamato S, Kanaya E, Kim JJ, Koga Y, Takano K, Kanaya S (2012) Isolation of a novel cutinase homolog with polyethylene terephthalate-degrading activity from leafbranch compost by using a metagenomic approach.

Volkering F, Breure AM, van Adel JG (1993) Effect of microorganisms on the bioavailability and biodegradation of crystalline naphthalene. Appl Microbiol Biotechnol 40:535–540 5. Bosma TNP, Middeldorp PJM, Scraa G, Zender AJB (1997) Mass transfer limitation of biotransformation: quantifying bioavailability. Environ Sci Technol 31:248–252 6. Dolfing J, Xu A, Gray ND, Larter SR, Head IM (2009) The thermodynamic landscape of methanogenic PAH degradation. Microbiol Biotechnol 2:566–574 7. Moscoso F, Ferreira L, Deive FJ, Mora´n P, Sanroma´n MA (2013) Viability of phenanthrene biodegradation by an isolated bacterial consortium: optimization and scale-up.

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